PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 909054
Common NameARALYDRAFT_909054
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 270aa    MW: 29857.3 Da    PI: 6.8497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
909054genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.5e-05101123123
              EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
              ++C++C ++F ++  L  H++ H
   909054 101 FSCNYCQRTFYSSQALGGHQNAH 123
              89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-796128No hitNo description
Gene3DG3DSA:3.30.160.608.3E-499127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.635101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MESSSGKPRS SDSSCIVSAS TTLPFPDSPK LNLKNYNRDA EAARDHDQIE GEEGVRLELM  60
LAGYDSSQPQ LNQELNLLNC LEAGVVTPSF NGSSSTEQKL FSCNYCQRTF YSSQALGGHQ  120
NAHKRERTLA KRGQRMASAA AFGHPYSFAP VPFHGQYSNR SLGIQAHSMS HKLSSYNVFG  180
GEYGQINWSR IPLVQQPAIG KLTSTENHYN HHQMMIAPPL TSTCENIGRF DVGRIPVDLP  240
TSELWQRGEE LLKPAEEEQQ KNLDLSLKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937450.0AB493745.1 Arabidopsis thaliana At5g10970 mRNA for hypothetical protein, partial cds, clone: RAAt5g10970.
GenBankAL3652340.0AL365234.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project).
GenBankAL3912220.0AL391222.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871446.10.0zinc finger family protein
SwissprotQ392624e-79ZFP3_ARATH; Zinc finger protein 3
TrEMBLD7M3K40.0D7M3K4_ARALL; Zinc finger family protein
STRINGscaffold_601111.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-164C2H2 family protein